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- #!/bin/sh
- #PBS -N noUMI_unpair
- #PBS -j oe
- #PBS -l ncpus=20
- #PBS -l nodes=1
- #PBS -l mem=30G
- source /home/liuxiangqiong/miniconda3/bin/activate base
- cmddir=/cgdata/liuxiangqiong/work62pancancer/Client/v0/script/20220606
- echo "for germline"
- $cmddir/s5_noUMI_Germline_gatk_unpair_20220606.sh
- #for chemical
- echo "for HL sites"
- $cmddir/s6_noUMI_HL_gatk_unpair_20220606.sh
- #for HLA
- echo "for HLA"
- $cmddir/s8_noUMI_HLA_hlahd_unpair_20220606.pbs
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