#!/bin/sh
#PBS -N noUMI_unpair
#PBS -j oe
#PBS -l ncpus=20
#PBS -l nodes=1
#PBS -l mem=30G
source  /home/liuxiangqiong/miniconda3/bin/activate base
cmddir=/cgdata/liuxiangqiong/work62pancancer/Client/v0/script/20220606

echo "for germline"
$cmddir/s5_noUMI_Germline_gatk_unpair_20220606.sh
#for chemical
echo "for HL sites"
$cmddir/s6_noUMI_HL_gatk_unpair_20220606.sh
#for HLA
echo "for HLA"
$cmddir/s8_noUMI_HLA_hlahd_unpair_20220606.pbs