- #!/usr/bin/env bash
- #PBS -N lcWGS
- #PBS -j oe
- #PBS -l ncpus=8
- #PBS -l nodes=1
- #PBS -l mem=30G
- sam_list=$sam_list
- sams=(`cat $sam_list`)
- echo "Samples:" ${sams[*]}
- echo $lcwgs_path
- echo "bash $lcwgs_path/run_lcWGS_call_L2.sh -r $SeqLen -i $indir -d $out -s ${sams[${PBS_ARRAY_INDEX}]}"
- sh $lcwgs_path/run_lcWGS_call_L2.sh -r $SeqLen -i $indir -x $lcwgs_path -d $out -s ${sams[${PBS_ARRAY_INDEX}]} &> $log.${sams[${PBS_ARRAY_INDEX}]}
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