#!/bin/sh
#PBS -N FMBY2_cnv
#PBS -j oe
#PBS -l ncpus=8
#PBS -l nodes=1
#PBS -l mem=20G

set -e
sams=(`cut -f1 $sam_list`)
panels=(`cut -f2 $sam_list`)
echo "Samples:" ${sams[*]}
echo "panels:" ${panels[*]}
echo "CNV_dir:" $cnv_dir

sh $script_dir/run_FMBY2_cnv_call_L2.sh -x $script_dir -o $out_dir -c $cnv_dir -p ${panels[${PBS_ARRAY_INDEX}]} -s ${sams[${PBS_ARRAY_INDEX}]} &> $log.${sams[${PBS_ARRAY_INDEX}]}