inputpath=$1 outpath=$2 curPath=$(dirname $(readlink -f "$0")) batchID=$(basename $inputpath) mkdir -p ${outpath}/${batchID}; ls ${inputpath} > ${outpath}/${batchID}/tmp; awk -F "_" '{print $2}' ${outpath}/${batchID}/tmp > ${outpath}/${batchID}/sample; python3 $curPath/QAseq_batch_pbs_v5.py -i $inputpath -o $outpath/${batchID} -s ${outpath}/${batchID}/sample rm ${outpath}/${batchID}/tmp;