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fusion_gene_parterner_exonID.txt

fusion_gene_parterner_exonID.txt 8.2 KB
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  1. gene5	transcript5	gene3	transcript3	detail
    2. 

  2. ATIC	NM_004044	ALK	NM_004304	ATIC_exon7-ALK_exon20,ATIC_exon7-ALK_exon19,ATIC_exon7-ALK_exon18,ATIC_exon8-ALK_exon20,ATIC_exon8-ALK_exon19,ATIC_exon8-ALK_exon18
    3. 

  3. CARS1	NM_001751	ALK	NM_004304	CARS1_exon18-ALK_exon20,CARS1_exon18-ALK_exon19,CARS1_exon18-ALK_exon18,CARS1_exon17-ALK_exon20,CARS1_exon17-ALK_exon19,CARS1_exon17-ALK_exon18
    4. 

  4. CCDC6	NM_005436	RET	NM_020975	CCDC6_exon2-RET_exon10,CCDC6_exon2-RET_exon11,CCDC6_exon2-RET_exon12,CCDC6_exon1-RET_exon10,CCDC6_exon1-RET_exon11,CCDC6_exon1-RET_exon12
    5. 

  5. CD74	NM_001025159	ROS1	NM_002944	CD74_exon7-ROS1_exon36,CD74_exon7-ROS1_exon35,CD74_exon7-ROS1_exon34,CD74_exon7-ROS1_exon33,CD74_exon7-ROS1_exon32,CD74_exon7-ROS1_exon31,CD74_exon6-ROS1_exon36,CD74_exon6-ROS1_exon35,CD74_exon6-ROS1_exon34,CD74_exon6-ROS1_exon33,CD74_exon6-ROS1_exon32,CD74_exon6-ROS1_exon31
    6. 

  6. CLTC	NM_004859	ALK	NM_004304	CLTC_exon30-ALK_exon20,CLTC_exon30-ALK_exon19,CLTC_exon30-ALK_exon18,CLTC_exon31-ALK_exon20,CLTC_exon31-ALK_exon19,CLTC_exon31-ALK_exon18,CLTC_exon32-ALK_exon20,CLTC_exon32-ALK_exon19,CLTC_exon32-ALK_exon18
    7. 

  7. DCTN1	NM_004082	ALK	NM_004304	DCTN1_exon17-ALK_exon20,DCTN1_exon17-ALK_exon19,DCTN1_exon17-ALK_exon18,DCTN1_exon16-ALK_exon20,DCTN1_exon16-ALK_exon19,DCTN1_exon16-ALK_exon18
    8. 

  8. EML4	NM_019063	ALK	NM_004304	EML4_exon2-ALK_exon20,EML4_exon2-ALK_exon19,EML4_exon2-ALK_exon18,EML4_exon3-ALK_exon20,EML4_exon3-ALK_exon19,EML4_exon3-ALK_exon18,EML4_exon6-ALK_exon20,EML4_exon6-ALK_exon19,EML4_exon6-ALK_exon18,EML4_exon7-ALK_exon20,EML4_exon7-ALK_exon19,EML4_exon7-ALK_exon18,EML4_exon13-ALK_exon20,EML4_exon13-ALK_exon19,EML4_exon13-ALK_exon18,EML4_exon14-ALK_exon20,EML4_exon14-ALK_exon19,EML4_exon14-ALK_exon18,EML4_exon15-ALK_exon20,EML4_exon15-ALK_exon19,EML4_exon15-ALK_exon18,EML4_exon16-ALK_exon20,EML4_exon16-ALK_exon19,EML4_exon16-ALK_exon18,EML4_exon17-ALK_exon20,EML4_exon17-ALK_exon19,EML4_exon17-ALK_exon18,EML4_exon18-ALK_exon20,EML4_exon18-ALK_exon19,EML4_exon18-ALK_exon18,EML4_exon19-ALK_exon20,EML4_exon19-ALK_exon19,EML4_exon19-ALK_exon18,EML4_exon20-ALK_exon20,EML4_exon20-ALK_exon19,EML4_exon20-ALK_exon18,EML4_exon21-ALK_exon20,EML4_exon21-ALK_exon19,EML4_exon21-ALK_exon18
    9. 

  9. EZR	NM_001111077	ROS1	NM_002944	EZR_exon10-ROS1_exon36,EZR_exon10-ROS1_exon35,EZR_exon10-ROS1_exon34,EZR_exon10-ROS1_exon33,EZR_exon10-ROS1_exon32,EZR_exon10-ROS1_exon31,EZR_exon9-ROS1_exon36,EZR_exon9-ROS1_exon35,EZR_exon9-ROS1_exon34,EZR_exon9-ROS1_exon33,EZR_exon9-ROS1_exon32,EZR_exon9-ROS1_exon31
    10. 

  10. GOPC	NM_020399	ROS1	NM_002944	GOPC_exon9-ROS1_exon36,GOPC_exon9-ROS1_exon35,GOPC_exon9-ROS1_exon34,GOPC_exon9-ROS1_exon33,GOPC_exon9-ROS1_exon32,GOPC_exon9-ROS1_exon31,GOPC_exon8-ROS1_exon36,GOPC_exon8-ROS1_exon35,GOPC_exon8-ROS1_exon34,GOPC_exon8-ROS1_exon33,GOPC_exon8-ROS1_exon32,GOPC_exon8-ROS1_exon31,GOPC_exon5-ROS1_exon36,GOPC_exon5-ROS1_exon35,GOPC_exon5-ROS1_exon34,GOPC_exon5-ROS1_exon33,GOPC_exon5-ROS1_exon32,GOPC_exon5-ROS1_exon31,GOPC_exon4-ROS1_exon36,GOPC_exon4-ROS1_exon35,GOPC_exon4-ROS1_exon34,GOPC_exon4-ROS1_exon33,GOPC_exon4-ROS1_exon32,GOPC_exon4-ROS1_exon31
    11. 

  11. HIP1	NM_005338	ALK	NM_004304	HIP1_exon31-ALK_exon20,HIP1_exon31-ALK_exon19,HIP1_exon31-ALK_exon18,HIP1_exon30-ALK_exon20,HIP1_exon30-ALK_exon19,HIP1_exon30-ALK_exon18,HIP1_exon29-ALK_exon20,HIP1_exon29-ALK_exon19,HIP1_exon29-ALK_exon18,HIP1_exon28-ALK_exon20,HIP1_exon28-ALK_exon19,HIP1_exon28-ALK_exon18,HIP1_exon22-ALK_exon20,HIP1_exon22-ALK_exon19,HIP1_exon22-ALK_exon18,HIP1_exon21-ALK_exon20,HIP1_exon21-ALK_exon19,HIP1_exon21-ALK_exon18
    12. 

  12. KIF5B	NM_004521	ALK	NM_004304	KIF5B_exon25-ALK_exon20,KIF5B_exon25-ALK_exon19,KIF5B_exon25-ALK_exon18,KIF5B_exon24-ALK_exon20,KIF5B_exon24-ALK_exon19,KIF5B_exon24-ALK_exon18,KIF5B_exon23-ALK_exon20,KIF5B_exon23-ALK_exon19,KIF5B_exon23-ALK_exon18,KIF5B_exon22-ALK_exon20,KIF5B_exon22-ALK_exon19,KIF5B_exon22-ALK_exon18,KIF5B_exon21-ALK_exon20,KIF5B_exon21-ALK_exon19,KIF5B_exon21-ALK_exon18,KIF5B_exon19-ALK_exon20,KIF5B_exon19-ALK_exon19,KIF5B_exon19-ALK_exon18,KIF5B_exon18-ALK_exon20,KIF5B_exon18-ALK_exon19,KIF5B_exon18-ALK_exon18,KIF5B_exon17-ALK_exon20,KIF5B_exon17-ALK_exon19,KIF5B_exon17-ALK_exon18,KIF5B_exon16-ALK_exon20,KIF5B_exon16-ALK_exon19,KIF5B_exon16-ALK_exon18,KIF5B_exon15-ALK_exon20,KIF5B_exon15-ALK_exon19,KIF5B_exon15-ALK_exon18
    13. 

  13. KIF5B	NM_004521	RET	NM_020975	KIF5B_exon25-RET_exon10,KIF5B_exon25-RET_exon11,KIF5B_exon25-RET_exon12,KIF5B_exon24-RET_exon10,KIF5B_exon24-RET_exon11,KIF5B_exon24-RET_exon12,KIF5B_exon23-RET_exon10,KIF5B_exon23-RET_exon11,KIF5B_exon23-RET_exon12,KIF5B_exon22-RET_exon10,KIF5B_exon22-RET_exon11,KIF5B_exon22-RET_exon12,KIF5B_exon21-RET_exon10,KIF5B_exon21-RET_exon11,KIF5B_exon21-RET_exon12,KIF5B_exon19-RET_exon10,KIF5B_exon19-RET_exon11,KIF5B_exon19-RET_exon12,KIF5B_exon18-RET_exon10,KIF5B_exon18-RET_exon11,KIF5B_exon18-RET_exon12,KIF5B_exon17-RET_exon10,KIF5B_exon17-RET_exon11,KIF5B_exon17-RET_exon12,KIF5B_exon16-RET_exon10,KIF5B_exon16-RET_exon11,KIF5B_exon16-RET_exon12,KIF5B_exon15-RET_exon10,KIF5B_exon15-RET_exon11,KIF5B_exon15-RET_exon12
    14. 

  14. KLC1	NM_005552	ALK	NM_004304	KLC1_exon8-ALK_exon20,KLC1_exon8-ALK_exon19,KLC1_exon8-ALK_exon18,KLC1_exon9-ALK_exon20,KLC1_exon9-ALK_exon19,KLC1_exon9-ALK_exon18
    15. 

  15. LRIG3	NM_153377	ROS1	NM_002944	LRIG3_exon17-ROS1_exon36,LRIG3_exon17-ROS1_exon35,LRIG3_exon17-ROS1_exon34,LRIG3_exon17-ROS1_exon33,LRIG3_exon17-ROS1_exon32,LRIG3_exon17-ROS1_exon31,LRIG3_exon16-ROS1_exon36,LRIG3_exon16-ROS1_exon35,LRIG3_exon16-ROS1_exon34,LRIG3_exon16-ROS1_exon33,LRIG3_exon16-ROS1_exon32,LRIG3_exon16-ROS1_exon31
    16. 

  16. NCOA4	NM_001145260	RET	NM_020975	NCOA4_exon8-RET_exon10,NCOA4_exon8-RET_exon11,NCOA4_exon8-RET_exon12,NCOA4_exon7-RET_exon10,NCOA4_exon7-RET_exon11,NCOA4_exon7-RET_exon12
    17. 

  17. NPM1	NM_001355006	ALK	NM_004304	NPM1_exon5-ALK_exon20,NPM1_exon5-ALK_exon19,NPM1_exon5-ALK_exon18,NPM1_exon6-ALK_exon20,NPM1_exon6-ALK_exon19,NPM1_exon6-ALK_exon18
    18. 

  18. RANBP2	NM_006267	ALK	NM_004304	RANBP2_exon18-ALK_exon20,RANBP2_exon18-ALK_exon19,RANBP2_exon18-ALK_exon18,RANBP2_exon19-ALK_exon20,RANBP2_exon19-ALK_exon19,RANBP2_exon19-ALK_exon18
    19. 

  19. SDC4	NM_002999	ROS1	NM_002944	SDC4_exon5-ROS1_exon36,SDC4_exon5-ROS1_exon35,SDC4_exon5-ROS1_exon34,SDC4_exon5-ROS1_exon33,SDC4_exon5-ROS1_exon32,SDC4_exon5-ROS1_exon31,SDC4_exon4-ROS1_exon36,SDC4_exon4-ROS1_exon35,SDC4_exon4-ROS1_exon34,SDC4_exon4-ROS1_exon33,SDC4_exon4-ROS1_exon32,SDC4_exon4-ROS1_exon31,SDC4_exon3-ROS1_exon36,SDC4_exon3-ROS1_exon35,SDC4_exon3-ROS1_exon34,SDC4_exon3-ROS1_exon33,SDC4_exon3-ROS1_exon32,SDC4_exon3-ROS1_exon31,SDC4_exon2-ROS1_exon36,SDC4_exon2-ROS1_exon35,SDC4_exon2-ROS1_exon34,SDC4_exon2-ROS1_exon33,SDC4_exon2-ROS1_exon32,SDC4_exon2-ROS1_exon31
    20. 

  20. SLC34A2	NM_006424	ROS1	NM_002944	SLC34A2_exon4-ROS1_exon36,SLC34A2_exon4-ROS1_exon35,SLC34A2_exon4-ROS1_exon34,SLC34A2_exon4-ROS1_exon33,SLC34A2_exon4-ROS1_exon32,SLC34A2_exon4-ROS1_exon31,SLC34A2_exon5-ROS1_exon36,SLC34A2_exon5-ROS1_exon35,SLC34A2_exon5-ROS1_exon34,SLC34A2_exon5-ROS1_exon33,SLC34A2_exon5-ROS1_exon32,SLC34A2_exon5-ROS1_exon31,SLC34A2_exon13-ROS1_exon36,SLC34A2_exon13-ROS1_exon35,SLC34A2_exon13-ROS1_exon34,SLC34A2_exon13-ROS1_exon33,SLC34A2_exon13-ROS1_exon32,SLC34A2_exon13-ROS1_exon31
    21. 

  21. STRN	NM_003162	ALK	NM_004304	STRN_exon4-ALK_exon20,STRN_exon4-ALK_exon19,STRN_exon4-ALK_exon18,STRN_exon3-ALK_exon20,STRN_exon3-ALK_exon19,STRN_exon3-ALK_exon18
    22. 

  22. TFG	NM_006070	ALK	NM_004304	TFG_exon4-ALK_exon20,TFG_exon4-ALK_exon19,TFG_exon4-ALK_exon18,TFG_exon5-ALK_exon20,TFG_exon5-ALK_exon19,TFG_exon5-ALK_exon18,TFG_exon6-ALK_exon20,TFG_exon6-ALK_exon19,TFG_exon6-ALK_exon18,TFG_exon7-ALK_exon20,TFG_exon7-ALK_exon19,TFG_exon7-ALK_exon18
    23. 

  23. TPM3	NM_153649	ALK	NM_004304	TPM3_exon8-ALK_exon20,TPM3_exon8-ALK_exon19,TPM3_exon8-ALK_exon18,TPM3_exon7-ALK_exon20,TPM3_exon7-ALK_exon19,TPM3_exon7-ALK_exon18
    24. 

  24. TPM3	NM_153649	ROS1	NM_002944	TPM3_exon8-ROS1_exon36,TPM3_exon8-ROS1_exon35,TPM3_exon8-ROS1_exon34,TPM3_exon8-ROS1_exon33,TPM3_exon8-ROS1_exon32,TPM3_exon8-ROS1_exon31,TPM3_exon7-ROS1_exon36,TPM3_exon7-ROS1_exon35,TPM3_exon7-ROS1_exon34,TPM3_exon7-ROS1_exon33,TPM3_exon7-ROS1_exon32,TPM3_exon7-ROS1_exon31
    25. 

  25. TPM4	NM_003290	ALK	NM_004304	TPM4_exon6-ALK_exon20,TPM4_exon6-ALK_exon19,TPM4_exon6-ALK_exon18,TPM4_exon7-ALK_exon20,TPM4_exon7-ALK_exon19,TPM4_exon7-ALK_exon18,TPM4_exon8-ALK_exon20,TPM4_exon8-ALK_exon19,TPM4_exon8-ALK_exon18
    26. 

  26. TPR	NM_003292	ALK	NM_004304	TPR_exon16-ALK_exon20,TPR_exon16-ALK_exon19,TPR_exon16-ALK_exon18,TPR_exon15-ALK_exon20,TPR_exon15-ALK_exon19,TPR_exon15-ALK_exon18
    27.