- inputpath=$1
- outpath=$2
- curPath=$(dirname $(readlink -f "$0"))
- batchID=$(basename $inputpath)
- mkdir -p ${outpath}/${batchID};
- ls ${inputpath} > ${outpath}/${batchID}/tmp;
- awk -F "_" '{print $2}' ${outpath}/${batchID}/tmp > ${outpath}/${batchID}/sample;
- python3 $curPath/QAseq_batch_pbs_v5.py -i $inputpath -o $outpath/${batchID} -s ${outpath}/${batchID}/sample
- rm ${outpath}/${batchID}/tmp;
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