- inputpath=$1
- laneid=$2
- starttime="`date '+%Y%m%d%H%M%S'`"
- nohup python3 /cgdata/liuxiangqiong/work62pancancer/Client/v0/script/20220705/main_20221026_v0.py -i ${inputpath} -l ${laneid} >${inputpath}/runlog1.txt 2>&1 &
- wait
- echo "all process is finished"
- echo "QCcheck and summary"
- python3 /cgdata/liuxiangqiong/work62pancancer/Client/v0/script/20220705/datafile_QCcheck_summary_v0_20220929.py -i ${inputpath} -l ${laneid}
- endtime="`date '+%Y%m%d%H%M%S'`"
- echo "run " $[$endtime-$starttime]"s">${inputpath}/${laneid}_processtime.log2
|
