| 1234567891011121314151617 |
- #!/usr/bin/env bash
- lab_info_file="/ngs/Lab/肿瘤实验数据/LAB-qc.xls"
- sample_info_file_total="/ngs/Project/项目进度表/阅尔基因项目信息总表-0606.xlsx"
- sample_info_file="/ngs/BDA/18gene/阅尔基因项目信息总表-改.xlsx"
- lc18_kdb_file="/ngs/BDA/18gene/知识库/kdb_server.xlsx"
- record_xlsx="/ngs/BDA/18gene/知识库/阅动样本信息统计.xlsx"
- base_info_file="/ngs/BDA/18gene/知识库/18gene_TotalSample_UMIkinds_VAF_stat.xlsx"
- lc_db_file="/ngs/BDA/18gene/自动报告/yuedong.db"
- input_file=$1
- shift
- log_dir=$1
- shift
- output_dir="$log_dir"
- lc18 server_mode -i $input_file -k $lc18_kdb_file -o $output_dir -s $sample_info_file -l $lab_info_file -r $record_xlsx -b $base_info_file -d $lc_db_file --log_dir $log_dir $@
|
