#!/usr/bin/env bash

         lab_info_file="/ngs/Lab/肿瘤实验数据/LAB-qc.xls"
sample_info_file_total="/ngs/Project/项目进度表/阅尔基因项目信息总表-0606.xlsx"
      sample_info_file="/ngs/BDA/18gene/阅尔基因项目信息总表-改.xlsx"
         lc18_kdb_file="/ngs/BDA/18gene/知识库/kdb_server.xlsx"
           record_xlsx="/ngs/BDA/18gene/知识库/阅动样本信息统计.xlsx"
        base_info_file="/ngs/BDA/18gene/知识库/18gene_TotalSample_UMIkinds_VAF_stat.xlsx"
            lc_db_file="/ngs/BDA/18gene/自动报告/yuedong.db"

input_file=$1
shift
log_dir=$1
shift
output_dir="$log_dir"

lc18 server_mode -i $input_file -k $lc18_kdb_file -o $output_dir -s $sample_info_file -l $lab_info_file -r $record_xlsx -b $base_info_file -d $lc_db_file --log_dir $log_dir $@
